Investigation of Atomic Level Patterns in Protein—Small Ligand Interactions
نویسندگان
چکیده
منابع مشابه
Investigation of Atomic Level Patterns in Protein—Small Ligand Interactions
BACKGROUND Shape complementarity and non-covalent interactions are believed to drive protein-ligand interaction. To date protein-protein, protein-DNA, and protein-RNA interactions were systematically investigated, which is in contrast to interactions with small ligands. We investigate the role of covalent and non-covalent bonds in protein-small ligand interactions using a comprehensive dataset ...
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چکیده ندارد.
Verification of protein structures: patterns of nonbonded atomic interactions.
A novel method for differentiating between correctly and incorrectly determined regions of protein structures based on characteristic atomic interaction is described. Different types of atoms are distributed nonrandomly with respect to each other in proteins. Errors in model building lead to more randomized distributions of the different atom types, which can be distinguished from correct distr...
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ژورنال
عنوان ژورنال: PLoS ONE
سال: 2009
ISSN: 1932-6203
DOI: 10.1371/journal.pone.0004473